Genomes

Genomes
by Terence A. Brown

Genomes
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Book Summary Information

Author: Terence A. Brown
Edition: Paperback
Audio: English (Unknown); English (Original Language); English (Published)
Published: 1999-05-26
ISBN: 0471316180
Number of pages: 608
Publisher: Wiley-Liss

Book Reviews of Genomes

Book Review: Good overview of modern genetics
Summary: 4 Stars

Because of the explosion of genetics research and technology in today's world, many textbooks and monographs on the subject have appeared. This book is certainly one of the finest of these, and emphasizes, as stated in the the preface, the major research issues in genetics, rather than issues that were important two decades ago. Genomes, not genes, the author states, should be the topic of primary focus. The more fundamental 'microscopic' processes such as DNA replication and mutation are studied in terms of their effects on the genome. This reflects the current move in genetics to find common ground between classical genetics and modern molecular genetics. Clearly the author is very excited about the developments in genetics that have taken place in the last decade, and this shows in his writing. The only major omission in the book is the lack of exercises; these are of upmost importance in the learning process. The book, written for beginning graduate students, could also be useful to mathematicians, physicists, or computer scientists who are moving into bioinformatics or computational biology.

Some of the more interesting discussions in the book include: 1. The C-value paradox: The correlation between the complexity of an organism and the size of its genome is explained by a space optimization argument, i.e. the genomes of simpler organisms conserve space by packing the genes closer together. 2. Using DNA markers versus gene markers for genetic mapping. 3. Single nucleotide polymorphisms, oligonucleotide hybridization analysis, and their use in DNA chip technology and dynamic allele-specific hybridization. 4. The need for physical mapping techniques and the discussion on the discrepancies between genetic and physical maps of S. cerevisiae chromosome III. 5. The use of orthogonal field alternation gel electrophoresis to separate molecules of more than 50kb in length. 6. Rapid sequence acquisition strategies, such as expressed sequence tags and sequence skimming. 7. The ethicial ramifications of the Human Genome Project. 8. The difficulty of existing software programs to assist in the location of exon-intron boundaries. 9. Homology searching and analysis. 10. The telomere and the role of telomeric proteins in capping chromosome ends. 11. The location of genes and the isochore model of genome organization. 12. The role of extra chromosomal genes in explaining inheritance patterns of some phenotypes in fungi, yeasts, and algae. 13. The (unanswered) questions as to why organelle genomes cannot be transported through the membranes that surround mitochondira and chloroplasts. 14. The discovery in the 1980s that DNA transfer from organelle to nucleus still occurs and the role of promiscuous DNA. 15. The experimental evidence that genes are made of DNA. 16. The role of bacterial RNA polymerase as a 'sliding clamp'. 17. The three-dimensional structure of tRNA. 18. Ribosome frameshifting. 19. Transient changes in genome activity. 20. Rearrangements of genomes 21. Genome regulation by feedback loops. 22. The genetic basis of flower development. 23. Mutations and recombination. Readers interested in genetic algorithms will appreciate this discussion. 24. The experimental detection of mutations. 25. Adapative mutations in E. coli. Because of its challenge to the current paradigm of evolution, this discussion was particularly interesting. 26. Evidence for ancient genome duplication and molecular phylogenetics.

Summary of Genomes

Responding to the immense changes due to recent development in research, Genomes is the first in a generation of molecular genetics books which combine standard molecular biology with more contemporary genomics. This book focuses on genome organization, expression, replication, and evolution, and includes a description of applications for molecular ecology and anthropology, reflecting the impact of genome biology on other fields of study.

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